Bwa Tool For Mac Terminal
Terminal app can be daunting at first, but it’s really the best way to hack into your Mac’s configurations and preferences to customize things to work for you rather than against you. With the right Terminal commands, you can tweak the Finder, mess with the user interface, build a more private and secure Mac, and even enable features that aren’t officially supported on older Macs.
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Here are a few of the better ones.
The Mac Observer rounded up several alternatives to Terminal you can use to flex your macOS command line muscles. Apple's Terminal app on the Mac is a great tool for diving into the command line.
Use the Bless Command Step. Click the magnifying glass icon at the top of the Mac screen to display the Spotlight dialog box, type 'Terminal' and then click 'Terminal' in the list of results to launch the Terminal utility. Mac OS X includes a great terminal editor, but among the handful of alternatives is one that easily rises above them all. ITerm2 is our pick for the best terminal emulator for Mac OS X thanks to. Winclone is a tool from Twocanoes Software that creates a clone of the Windows Boot Camp partition for recovery or migration to another Mac. (Pricing starts at $29.99 for an individual license. Download a macOS installer, such as macOS Mojave or macOS High Sierra. To download macOS Mojave or High Sierra for this purpose, download from a Mac that is using macOS Sierra 10.12.5 or later, or El Capitan 10.11.6. After they did this I was able to use BWA aligner from my MAC terminal anywhere. I recently had to erase my hard drive and need to reinstall BWA, and don't know how to make it where I can run BWA from my MAC terminal.
Hack The Finder
The Finder can be hacked a bit using the Terminal, of course, so we figured we could show you a few tricks, too. Here’s how to hack up the Finder a bit to make it work better for you.
Show Hidden Files
The Finder hides many configuration files in the finder, some of which you might want to get into to change things. Most of the time, these files should stay hidden or left alone, but we’re not interested in playing it safe all the time. If you want to see all the files on your Mac for your own reasons, launch Terminal and type or paste in the following command:
defaults write com.apple.finder AppleShowAllFiles TRUE
Then, issue the command to restart the Finder (killall Finder) and hit the Return key.
If, after you’ve found the hidden files you were looking for, you want to return the Finder to its pristine, hidden-file state, simply do the same thing, except change TRUE to FALSE, and you’ll be good to go.
Change Screenshot Formats
Taking a screenshot in OS X is as simple as hitting Command-Shift-3 for the whole screen, and Command-Shift-4 for a selection portion of your screen. These screenshots end up on your Desktop in the Finder, and by default are PNG files. If you want to change that default to, say, JPG or PDF, simply type or paste the following command into Terminal.
defaults write com.apple.screencapture type file-extension
Just be sure to change “file-extension” above with the three letter suffix for the file type you want. So, if you want your screenshots to default to jpeg files, simply type or paste the following: defaults write com.apple.screencapture type JPG, and you’ll be good to go.
Show File Path Info
Sometimes, it can get confusing as to where you’re at in the Finder, especially if you have a lot of folders open in windows, and they have similar names. A neat way to remind yourself where you are is to enable the Path View in the title bar of your Finder windows. To do so, simply enter the following into your Terminal app.
defaults write com.apple.finder _FXShowPosixPathInTitle -bool YES
Now your Finder windows will all show you the file path structure, so you’ll be able to figure out where exactly you are when you get lost in a plethora of open folders and files. Slick!
Hack The User Interface
Now, let’s look at some commands you can issue in the Terminal to mess around with the user interface, to help you use your Mac the way you want, rather than the way they want. Whoever they are.
Disable Window Animations
Mountain Lion has a window animation that make things look slick, but can slow down vital workflow, especially on older Macs. To get rid of this subtle but occasionally annoying feature, zoom up to open animation, and issue the following command into your Terminal app:
defaults write NSGlobalDomain NSAutomaticWindowAnimationsEnabled -bool false
Now the windows will just appear without any opening animations, which should help things feel a bit snappier when running OS X on an older Mac. Change false to true to bring it back.
Get Rid Of Smooth Scrolling
When you launch a Safari window that needs scrolling and hit the space bar, OS X is set up to animate the scrolling down motion, so it feels smooth and silky. Some users complain about this effect being jerky and unattractive on Retina Macbooks, and would like to disable it. All you need to do is issue the following command into Terminal:
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defaults write -g NSScrollAnimationEnabled -bool NO
Now, when you hit the space bar in Safari or other scrolling windows, it will jump right to the next area on the page, rather than animating down. Change NO to YES to get it back.
Dump The Rubber Banding Effect
When you’re scrolling up or down in any OS X application, including the Finder, you may notice a sort of bouncy, rubber-band effect when you scroll past the top or bottom of a page or list too quickly. This mimics iOS beahvior, which is aesthetically pleasing, but it can be annoying at times, or slow down your process on an older Mac. To get rid of this feature, type or paste the following Terminal command:
defaults write -g NSScrollViewRubberbanding -int 0
Now this only works in some apps, so you’ll have to quit them and relaunch to make sure. Safari or Chrome don’t seem to lose the effect, but Finder and Evernote do, so play around with it to see if the apps you want to disable this within will work.
Enable Key Repeats
It used to be simple to get a repeated key on your Mac; just hold down any key and it would repeat after a certain amount of delay time. Now, however, in many OS X apps like TextEdit, you can’t do that anymore, as an alternate character popup menu will appear if you hold down a key that has those associated with it. If you want to get rid of that popup feature, and get your key repetition back, simply issue the following command in Terminal:
defaults write -g ApplePressAndHoldEnabled -bool false
Now you can hold down any key and get a repeat. Yessssssssss!
Make Your Mac More Secure
Now, we’re going to spend a little time with Terminal commands to make your Mac just a bit more secure and private. Feel free to follow along at home.
Read more at http://www.cultofmac.com/214558/mastering-terminal-to-hack-for-better-security/#PV7UucS3J1Zffkom.99
Erase Free Hard Drive Space Securely
When you delete files from your Mac’s hard drive, they don’t actually go anywhere. What gets deleted is your Mac’s ability to use them in any functional way. When new files are put on the Mac, they might (or might not) overwrite some or all of the older, already-trashed files. To keep your files private, you might want to securely delete files from the Trash, and you might also want to delete all the files from the free space on your Mac.
To do so, simply type or paste the following command into Terminal:
diskutil secureErase freespace 3/Volumes/hard-drive-name
Replace “hard-drive-name” with the actual name of your hard drive, and then hit enter. You’ll get a progress bar, and if you have a big drive, it will take some time, as it overwrites each sector 35 times, five times as much as the US Department of Defense recommends, so you can assume it’s safely removed. This will get rid of any lingering files that you’ve already thrown away on your Mac, but didn’t do so securely.
Reset Privacy Data On Your Mac
We all add new apps all the time, and in our socially-networked world, it’s hard not to jsut give the apps the permissions they need to run, and then move on. Sometimes, though, you might want to just revoke all app access to your private data and start over from scratch. In OS X 10.8 Mountain Lion, you can use Terminal to do just that. You’ll be revoking access to specific data services for all apps, one data service at a time. So, to revoke access to the Address Book, for example, you’ll want to enter the following command into Terminal:
tccutil reset AddressBook
This should revoke all access to Contacts data from your Address Book. For something like your Location Data, enter the following:
tccutil reset CoreLocationAgent
You can get a full list of these types of services by typing
launchctl list
into Terminal. There is, of course, a Privacy preference pane in the System Preferences app, but this is a bit more direct. And geeky, too!
Reschedule Time Machine Backups
A core feature of any data security plan is the backup system you use. Mac OS X’s Time Machine backups are fantastic and automatic, making sure your stuff is backed up on the fly, every hour. If you want to change the interval at which it backs your stuff up, however, you can do that via Terminal. Simply enter the following command into your Terminal app.
sudo defaults write/System/Library/LaunchDaemons/com.apple.backupd-auto StartInterval -int 1800
You’ll need to enter your admin password here as you’re invoking the Super User command, sudo. The 1800 there at the end will change your Time Machine backups to every 30 minutes, as it is an interval of seconds. To change it to back up every 15 minutes, use 900 in that spot. If you want to change it back to every hour, simply replace the 1800 in the above command to 3600.
Hack The Dashboard
Now, let’s look at the Dashboard with its widgets and things and see what we can do to hack it a bit.
Read more at http://www.cultofmac.com/214675/mastering-terminal-to-hack-your-macs-dashboard-os-x-tips/#Lrw1cuUrWmvYITDv.99
Put Your Dashboard Widgets On The Desktop
Honestly, I don’t use the Dashboard too much, as their functionality is limited, and it’s just faster to open a dedicated app that I can switch to with Command-Tab. However, maybe if I was able to drop them on the Desktop, I’d end up using a few of the more useful ones more often. It’s worth a shot, right?
All you need to do to make this happen is type or paste the following command into the Terminal app:
defaults write com.apple.dashboard devmode YES
Then enter the following command, as well.
killall Dock
Once that’s done, launch Dashboard with F12 (or whatever other keyboard shortcut you have defined for the Dashboard), and find the widget you want out of there. Click and hold on it, move it a bit, and then hit F12 again to dismiss the Dashboard. The widget should then appear above whatever app you’re in, and stay in the foreground.
To get rid of the widget from the Desktop, and put it back in the Dashboard, do the same thing in reverse. Click and hold on the widget, hit the F12 key to bring up the Dashboard, move the widget around a bit, and then release the mouse button. Boom. Widget replaced.
Get Rid Of Dashboard Altogether
Maybe you don’t like the Dashboard, have RAM issues, or otherwise want to just kill it completely. That’s not horribly difficult; just use the Terminal.
Type or paste the following command into the Terminal app, then hit Enter.
defaults write com.apple.dashboard mcx-disabled -boolean YES
Then, go ahead and restart the Dock again, with the following:
killall Dock
Now you’ll have no more Dashboard. So sad, see ya later. If you want to bring it back, of course, there’s a simple command to bring it back, replacing the YES above with a NO:
defaults write com.apple.dashboard mcx-disabled -boolean NO
Then killall Dock and you’re good to go.
Make Unsupported Features Work Again
Ok, so let’s take a look at a few of the newer features of the OS X world, and how to make them work on older, unsupported Macs using some Terminal magic.
Enable AirDrop Over Ethernet
AirDrop is one of those newer features, introduced in OS X Mountain Lion, that lets you share files to other supported AirDrop Macs on the same WiFi network as yours. Other folks can do the same thing to your Mac, as well. Unfortunately, AirDrop doesn’t work on older Macs, nor over Ethernet, by default.
If you’d like to try to make it work on your older Mac, simply past or type the following into your Terminal app:
defaults write com.apple.NetworkBrowser BrowseAllInterfaces -bool true
Then, log out of your Mac and log back in to check and see if it worked.
Now, AirDrop should work on your older, unsupported Mac as well as over Ethernet. If you ever want to turn this ability off for any reason, simply replace ‘true’ in the command above with ‘false.’
Enable Time Machine For Unsupported Network Volumes
Time Machine rocks, mainly because it backs stuff up on our Macs without us having to do much of anything to make it regular and consistent. One issue, hoever, with Time Machine is that it only works with supported drives on the network. like Apple’s own Airport Extreme with Time Machine. What if you have a network-attached storage device that you want to back your data up to? These drives tend to be a lot less expensive per storage unit than anything Apple sells, but they aren’t directly supported by Mac OS X.
To make it so you can see these unsupported drives within the Time Machine system, all you need to do is launch Terminal and then issue the following command:
defaults write com.apple.systempreferences TMShowUnsupportedNetworkVolumes 1
This tweak isn’t officially supported by Apple, and as such won’t have any guarantee of working as well as an Apple solution. However, if you’re willing to risk it, this might be a great thing to try.
© Amit Singh. All Rights Reserved.Written in December 2003Mac OS X Hacking Tools
Hacking? Tool?
The Jargon File is a popular lexicographic resource amongst hackers (and non-hackers too). Although it might have some subjective definitions I may not agree with, I have conveniently quoted verbatim the definitions of the terms 'hacker' and 'tool' as a preface to the contents of this page.
hacker[originally, someone who makes furniture with an axe]
1. A person who enjoys exploring the details of programmable systems and how to stretch their capabilities, as opposed to most users, who prefer to learn only the minimum necessary. RFC1392, the Internet Users' Glossary, usefully amplifies this as: A person who delights in having an intimate understanding of the internal workings of a system, computers and computer networks in particular.
more>>>tool1. n.A program used primarily to create, manipulate, modify, or analyze other programs, such as a compiler or an editor or a cross-referencing program. Oppose app, operating system; see also toolchain.
more>>>So?
It is eminently debatable whether one (that means me, you or whosoever else) is a 'hacker', but such a debate would probably be fruitless anyway, even meaningless. I do enjoy exploring the details of all sorts of things, including operating systems. This page is a compendium of some programs you might come across while tinkering with Mac OS X. Documentation for most of these tools exists, therefore my aim is not to reproduce documentation, but simply to maintain a cache of relevant information. I believe this would be useful to those who are new to Mac OS X, but are interested in exploring the system at a low(er) level. Note that many of the tools listed here are ones that are either new to Mac OS X (as compared to Unix style systems), or are different from their Unix counterparts. In other words, I have avoided listing 'standard' Unix/BSD tools. Moreover, do realize that some (like dynamic_pager and various daemons) are not really tools.
The following list has not been fully updated for Panther (10.3.x).
Tools
KernelEventAgent
/usr/sbin/KernelEventAgent handles one of the core system services (events such as file systems being mounted and unmounted, low disk space, network connections going down, etc.)
SystemStarter
/sbin/SystemStarter is run during system initialization to handle 'startup items'. See 'Mac OS X System Startup' for details.
aexml
/usr/sbin/aexml forwards XMLRPC and SOAP requests to the AppleEvent manager for further dispatching. More documentation is available on the Apple Developer Web Site.
appleping
/usr/bin/appleping exercises the AppleTalk network by sending packets to a named host.
ardbgd
/usr/sbin/ardbgd is the daemon for the Apple Remote Debugging Service.
asr
/usr/sbin/asr (Apple Software Restore) efficiently copies disk images and volumes, and can also accurately clone volumes.
bless
/usr/sbin/bless is used to set volume bootability characteristics for Macintoshes. The command can be used to select a folder on a mounted volume to act as the blessed system folder, and optionally update Open Firmware to boot from that volume. It can also be used to format and setup a volume for the first time. Finally, it can be used to query the folder(s) that are blessed on a volume. Try the following (non-destructive) commands:
% sudo bless -verbose -info / .. % sudo bless -verbose -plist -info /
blued
/usr/sbin/blued is the Bluetooth daemon.
cac_*
/usr/sbin/cac_* are scripts related to CAC (Common Access Card) support. A CAC can be thought of as a SmartCard that combines multiple cards (functions) into one. A CAC can enable physical access to buildings and controlled places, enable computer network and system access and serve as the primary platform for the PKI token.
cmpdylib
/usr/bin/cmpdylib compares two dynamic shared libraries for compatibility.
createhomedir
/usr/sbin/createhomedir creates and populates local home directories.
ddb
ddb is a debugging mechanism that can be compiled into Mac OS X, similar to BSD's kdb. While gdb can be used over Ethernet (through a kernel stub), ddb is compiled into the kernel and is used over a serial line. Most importantly, ddb requires an actual built-in hardware serial line on the debug target. Fortunately, gdb should suffice for almost all debugging needs unless one is trying to debug an Ethernet driver itself, say.
ddb is not present by default on Mac OS X. It must be compiled from source (xnu/osfmk/ddb in the CVS tree).
defaults
/usr/bin/defaults is used to access (read, write and delete) Mac OS X user defaults from the command line. For example, the following will print out Desktop background settings (including the pathname for the desktop background image, if any):
% defaults read com.apple.desktop Background
dev_mkdb
/usr/sbin/dev_mkdb creates a hash access method database (based on Berkeley DB) in /var/run/dev.db. This database contains the name of all devices under /dev.
diskarbitrationd
/usr/sbin/diskarbitrationd is a daemon that listens for connections from clients, notifies clients of the appearance of disks and filesystems, and governs the mounting of filesystems and claiming of disks amongst clients.
disktool
/usr/sbin/disktool is a command line utility for disk arbitration. It can be used to rename, eject, mount or unmount disks and volumes.
diskutil
/usr/sbin/diskutil is a utility for managing disks and volumes. It can be used to perform operations such as enabling/disabling HFS+ journaling, verifying and repairing permissions, erasing disks (including optical media), partitioning, creating and managing RAID sets etc. You typically need root access to use this utility.
ditto
/usr/bin/ditto copies files and directories to a destination directory. ditto can be used to 'thin' 'fat' (multiple-architecture) exectuables. It can also copy files selectively based on the contents of a BOM ('Bill of Materials'). One of the most useful features of ditto is that it can preserve resource fork and HFS meta-data information when copying files.
drutil
/usr/bin/drutil is a command line tool that uses the DiscRecording framework to interact with attached CD/DVD burning devices.
dscl
/usr/bin/dscl is the Directory Service command line utility.
dsperfmonitor
/usr/bin/dsperfmonitor is a directory tool for testing plugin performance in Directory Services.
dynamic_pager
/sbin/dynamic_pager is started during system initialization to manage swap files. See Mac OS X System Startup for details.
fdisk
/usr/sbin/fdisk displays or changes the DOS partition table found in the bootsector of x86 bootable disks.
fixPrecomp
/usr/bin/fixPrecomp is a tool for 'fixing' precompiled header warnings that occur when headers get out-of-sync with their precompiled versions - after a system update, say.
fixproc
/usr/bin/fixproc is a Perl script that 'fixes' a named process by performing the specified action (which can be check, kill, restart, exist or fix).
fs_usage
/usr/bin/fs_usage presents an ongoing display of system call usage information pertaining to file system activity. By default this includes all system processes except the running fs_usage process, Terminal, telnetd, sshd, rlogind, tcsh, csh and sh.
fstat
/usr/bin/fstat identifies open files (including sockets).
heap
/usr/bin/heap lists all the malloc-allocated buffers in the specified process's heap.
hdiutil
/usr/bin/hdiutil uses the DiskImages framework to manipulate disk image files.
hlfsd
/usr/sbin/hlfsd is the home-link file system daemon. It implements a file system containing a symbolic link to a subdirectory within a user's home directory, depending on the user which accessed that link.
installer
/usr/sbin/installer is the Mac OS X system software and package installer tool.
install_name_tool
/usr/bin/install_name_tool changes the dynamic shared library install names recorded in a Mach-O binary.
ioalloccount
/usr/sbin/ioalloccount displays some accounting of memory allocated by IOKit allocators, including object instances, in the kernel. This is useful for tracking memory leaks.
ioclasscount
/usr/sbin/ioclasscount displays the instance count, offset by the number of direct subclasses that have at least one instance allocated, for the classes specified. This is useful for tracking leaks.
ioreg
/usr/sbin/ioreg displays the IOKit registry. Try ioreg -l, for example, and you can see detailed registry information (including object properties) - such as details of various temperature sensors in the system (on the I2C bus).
iostat
/usr/sbin/iostat displays kernel I/O statistics on terminal, disk and cpu operations.
ipconfig
/usr/sbin/ipconfig can be used to get the number of network interfaces active (the ifcount argument), and also to retrieve various options associated with these interfaces. For example, 'ipconfig getoption en1 lease_time' prints the DHCP lease time of en1 if applicable. Finally, ipconfig can also be used to set an interface for BOOTP, DHCP etc.
kdump
/usr/bin/kdump displays the kernel trace files produced with ktrace in human readable format.
kextcache
/usr/sbin/kextcache creates or updates kext caches, which are used to speed up kernel extension loading operations and to prepare kexts for inclusion in such media as device ROM.
kextload
/sbin/kextload can be used to explicitly load kernel extensions, validate them to see that they can be loaded by other mechanisms, such as kextd, and to generate symbol files for debugging the kext in a running kernel.
kextstat
/usr/sbin/kextstat displays the status of any kernel extensions currently loaded in the kernel.
kextunload
/sbin/kextunload is used to terminate and unregister IOKit objects associated with a kernel extension and to unload the code and personalities for that kext.
kgmon
/usr/sbin/kgmon generates a dump of the operating system's profile buffers for later analysis by gprof.
ktrace
/usr/bin/ktrace enables kernel trace logging for the specified processes, causing trace data to be logged to a file. Traced kernel operations include system calls, namei translations, signal processing and I/O.
latency
/usr/bin/latency is used for monitoring scheduling and interrupt latency. The tool can also be used to set real time or timeshare scheduling policies.
ld
/usr/bin/ld is the (Mach) object file link editor.
leaks
/usr/bin/leaks examines a specified process for malloc-allocated buffers which are not referenced by the program.
lipo
/usr/bin/lipo creates or operates on multi-architecture ('fat') files. It can list the architecture types in a fat file, create a single fat file from one or more input files, thin out a single fat file to a specified architecture type, and extract, replace and/or remove architecture types from the input file.
lockfile
/usr/bin/lockfile can be used to create one or more (conditional) semaphore files, with the provision of waiting for a specified number of seconds and a specified number of retries.
lsbom
/usr/bin/lsbom interprets the contents of binary bom (bill-of-materials) files. bom is a file system used by the Mac OS X installer to determine which files to install, remove, or upgrade.
lsof
/usr/sbin/lsof lists information about files opened by processes.
lsvfs
/usr/bin/lsvfs lists known (currently loaded) virtual file systems.
mDNSResponder
/usr/sbin/mDNSResponder (Multicast DNS Responder) listens for and responds to DNS-format query packets sent via Multicast to UDP port 5353.
mach_init
/sbin/mach_init is a daemon that maintains various mappings between service names and the Mach ports that provide access to those services.
malloc_history
/usr/bin/malloc_history inspects a given process and lists the malloc allocations performed by it. It relies on information provided by the standard malloc library when debugging options have been turned on.
mig
/usr/bin/mig (Mach Interface Generator) is used to compile procedural interfaces to Mach's message-based APIs, based on descriptions of those APIs.
mkbom
/usr/bin/mkbom creates a bom (bill-of-materials) given a directory.
mkextunpack
/usr/sbin/mkextunpack extracts the contents of a multikext (mkext) archive.
netstat
/usr/sbin/netstat symbolically displays the contents of various network-related data structures.
nibindd
/usr/sbin/nibindd is a daemon that is responsible for finding, creating and destroying NetInfo servers.
nibtool
/usr/bin/nibtool is used for printing, verifying and updating nib files.
nicl
/usr/bin/nicl is a general-purpose utility for operating on NetInfo databases. Its commands allow one to create, read and manage NetInfo data.
nidomain
/usr/sbin/nidomain is an interface to nibindd to which it sends all of its requests about the domains served on a given machine. It can also be used to create and destroy NetInfo databases.
nifind
Bwa Software
/usr/bin/nifind finds a directory in the NetInfo hierarchy.
nigrep
/usr/bin/nigrep searches for a regular expression in the NetInfo hierarchy.
niload
/usr/bin/niload loads information from standard input into the given NetInfo domain.
nireport
/usr/bin/nireport prints tables from the NetInfo hierarchy.
niutil
/usr/bin/niutil is used to do arbitrary reads and writes on the given NetInfo domain.
nmedit
/usr/bin/nmedit is used to change global symbols to local symbols. It differs from strip in that it also changes the symbolic debugging information for the global symbols it changes to static symbols so that the resulting object can still be used with a debugger.
notifyd
/usr/sbin/notifyd is a daemon that facilitates processes to exchange stateless notification events.
nvram
/usr/sbin/nvram allows manipulation of Open Firmware non-volatile RAM variables.
objcopy
objcopy is part of binutils that you can download, compile and install. This utility copies the contents of an object file to another, using the GNU BFD (Binary File Descriptor) library to access the object files.
Itool For Mac
objdump
objdump is part of binutils. It displays information (including disassembly, if required) about one or more object files.
open
/usr/bin/open is a command line utility to open a file (or a directory or URL), just as if you had double-clicked the file's icon.
open-x11
/usr/bin/open-x11 is a wrapper shell script that provides open functionality for X11 applications.
orbd
/usr/bin/orbd is the Object Request Broker Daemon. It is a tool to enable clients to transparently locate and invoke persistent objects on servers in the CORBA environment.
osacompile
/usr/bin/osacompile compiles the given files, or standard input if non are listed, into a single output script.
osalang
/usr/bin/osalang prints information about installed OSA (Open Script Architecture) languages.
osascript
/usr/bin/osascript executes the given script file, or standard input if none is given. Scripts may be plain text or compiled scripts.
otool
/usr/bin/otool displays specified parts of object files or libraries (similar to ldd on Linux).
pagestuff
/usr/bin/pagestuff displays information about the specified logical pages of a file conforming to the Mach-O executable format.
pax
/bin/pax is a tool for reading, writing, and listing members ofan archive file. It is also used to copy directory hierarchies. pax supports various archive formats such as cpio, bcpio, sv4cpio, sv4crc, tar, and ustar.
pbcopy
/usr/bin/pbcopy is used to copy standard input to the pasteboard buffer.
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pbpaste
/usr/bin/pbpaste prints the contents of the pasteboard buffer.
pcscd
/usr/sbin/pcscd is a daemon used to dynamically allocate/deallocate Smart Card reader drivers at runtime and manage connections to the readers. Related utilities include /usr/bin/pcsctest and /usr/bin/pcsctool. These tools are taken from the MUSCLE (Movement for the Use of Smart Cards in a Linux Environment) project, a project to coordinate the development of smart cards and applications under Linux.
pdisk
/usr/sbin/pdisk is a menu driven program which partitions disks using the standard Apple disk partitioning scheme.
plutil
/usr/bin/plutil can be used to check the syntax of property list files, or convert a plist file from one format to another.
pmset
/usr/bin/pmset changes and reads power management settings such as idle sleep timing, wake on administrative access, automatic restart on power loss, etc.
pstat
/usr/sbin/pstat displays open file entry, swap space utilization, terminal state, and vnode data structures.
redo_prebinding
/usr/bin/redo_prebinding is used to redo the prebinding of an executable or dynamic library when one of the dependent dynamic library changes. The input file, executable or dynamic library, must have initially been prebound for this program to redo the prebinding.
say
/usr/bin/say uses the Speech Synthesis manager to convert input text to audible speech and either play it through the sound output device chosen in System Preferences or save it to an AIFF file.
screencapture
/usr/sbin/screencapture captures the screen (a window selection or a mouse selection) to the clipboard or a file (as PDF).
scselect
/usr/sbin/scselect is used to change current network location, or to list defined locations.
sc_usage
/usr/bin/sc_usage displays an ongoing sample of system call and page fault usage statistics for a given process.
scutil
/usr/sbin/scutil is a tool to communicate with configd, read and write from/to the configuration data store etc.
security
/usr/bin/security provides a command line interface to administer Keychains, manipulate keys and certificates, and do most things the Security framework is capable of.
segedit
/usr/bin/segedit extracts and/or replaces the named sections from the specified input file and creates an output.
setregion
/usr/bin/setregion is the command line utility for setting the DVD drive's 'region'.
sips
/usr/bin/sips is a command line interface to the Scriptable Image Processing Server. The graphical abilities of Mac OS X are exposed through this image processing service. The SIPS architecture contains tools for performing basic image alterations and support various image formats. The goal is to provide quick, convenient, desktop automation of common image processing operations.
slpd
/usr/sbin/slpd is the Service Location Protocol daemon that advertises local services to the network.
slp_reg
/usr/sbin/slp_reg is a tool to register URLs via the Service Location Protocol in order for remote machines to discover locally registered services.
softwareupdate
/usr/sbin/softwareupdate is a command line utility to perform software updates under Mac OS X.
srm
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/usr/bin/srm securely (by overwriting, renaming, and truncating before unlinking) removes files or directories.
sw_vers
/usr/bin/sw_vers prints the product name (such as Mac OS X), version and build number.
sysctl
/usr/sbin/sysctl retrieves kernel state and allows processes with appropriate privilege to set kernel state.
system_profiler
/usr/sbin/system_profiler is the command line system profiling utility.
tcpdump
/usr/sbin/tcpdump dumps traffic on a network.
top
/usr/bin/top displays an ongoing sample of system usage statistics (such as cpu utilization, memory usage etc. for each process).
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trpt
/usr/sbin/trpt interrogates the buffer of TCP trace records created when a socket is marked for debugging (via setsockopt()) and prints a readable description of these records.
update_prebinding
/usr/bin/update_prebinding tries to synchronize prebinding information for libraries and executables when new files are added to a system. Prebinding information is pre-calculated address information for libraries used by a given executable or library. By pre-determining where a function in another library is destined to be placed, the dynamic linker does not have to resolve symbols at application startup time.
vm_stat
/usr/bin/vm_stat displays Mach virtual memory statistics.
vmmap
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/usr/bin/vmmap displays the virtual memory regions allocated in a specified process, indicating how memory is being used, and what the purposes of memory at a given address might be.
vpnd
/usr/sbin/vpnd is the Mac OS X VPN service daemon.
xcode*
/usr/bin/xcode* are Xcode related commands.
xxd
/usr/bin/xxd creates a hex dump of a given file or standard input. It can also convert a hex dump back to its original binary form.